Well...
I have a hard time comprehending how SeaFoam in the intake migrated to the electrical system and messed up the ECU...
I will say this - it will definitely un-gunk an engine.
But, it could also reveal other issues that the gunk has been masking. Leaking seals, for example.
My truck was burning oil galore (quart every 350-400 miles) - a can of SeaFoam (and a complete fog-out of the neighborhood) and four oil changes later and most of the oil consumption issue is gone. Not the same car, and not saying it will solve all ills, but I also am not willing to accept that SeaFoam will ruin anything...especially the computer...
That being the case, with that few miles, you really shouldn't need to resort to it. Do the tune-up and go from there. Plugs, wires, cap, rotor, air filter, fuel filter, clean the MAF, replace the brittle vacuum lines, PCV valve, might wanna plan on O2 sensors at some point, tranny fluid, coolant...
Give your car a transfusion. Prolly solve most issues.